Index

_

__init__() (deeptrees.dataloading.datamodule.TreeCrownDelineationDataModule method) (deeptrees.dataloading.datasets.TreeCrownDelineationBaseDataset method) (deeptrees.dataloading.datasets.TreeCrownDelineationDataset method) (deeptrees.dataloading.datasets.TreeCrownDelineationInferenceDataset method) (deeptrees.dataloading.preprocessing.DistanceTransformGenerator method) (deeptrees.dataloading.preprocessing.GroundTruthGenerator method) (deeptrees.dataloading.preprocessing.MaskOutlinesGenerator method) (deeptrees.model.distance_model.DistanceModel method) (deeptrees.model.inference_model.InferenceModel method) (deeptrees.model.segmentation_model.SegmentationModel method) (deeptrees.modules.losses.BinarySegmentationLoss method) (deeptrees.modules.losses.BinarySegmentationLossWithLogits method)

_abc_impl (deeptrees.dataloading.datasets.TreeCrownDelineationBaseDataset attribute) (deeptrees.dataloading.datasets.TreeCrownDelineationDataset attribute) (deeptrees.dataloading.datasets.TreeCrownDelineationInferenceDataset attribute) (deeptrees.dataloading.preprocessing.DistanceTransformGenerator attribute) (deeptrees.dataloading.preprocessing.GroundTruthGenerator attribute) (deeptrees.dataloading.preprocessing.MaskOutlinesGenerator attribute)

A

apply_process() (deeptrees.dataloading.preprocessing.GroundTruthGenerator method) array_to_tif() (in module deeptrees.modules.utils)

augment_eval (deeptrees.dataloading.datamodule.TreeCrownDelineationDataModule attribute) augment_train (deeptrees.dataloading.datamodule.TreeCrownDelineationDataModule attribute)

B

batch_size (deeptrees.dataloading.datamodule.TreeCrownDelineationDataModule attribute)

BinarySegmentationLoss (class in deeptrees.modules.losses) BinarySegmentationLossWithLogits (class in deeptrees.modules.losses)

C

calc_band_stats() (in module deeptrees.modules.utils) chlorophyll_index() (in module deeptrees.modules.traits) compute_pyramid_patch_weight_loss() (in module deeptrees.modules.utils) concatenate_gci_to_raster() (deeptrees.dataloading.datasets.TreeCrownDelineationBaseDataset static method)

concatenate_hue_to_raster() (deeptrees.dataloading.datasets.TreeCrownDelineationBaseDataset static method) concatenate_ndvi_to_raster() (deeptrees.dataloading.datasets.TreeCrownDelineationBaseDataset static method) constrain_geometry_to_tile() (deeptrees.dataloading.preprocessing.GroundTruthGenerator method) create_batch_of_patches() (in module deeptrees.modules.utils)

D

deeptrees module deeptrees.dataloading module, [1] deeptrees.dataloading.datamodule module deeptrees.dataloading.datasets module deeptrees.dataloading.preprocessing module deeptrees.datasets module, [1] deeptrees.datasets.halleDOP20 module deeptrees.model module, [1] deeptrees.model.distance_model module deeptrees.model.inference_model module deeptrees.model.segmentation_model module

deeptrees.modules module, [1] deeptrees.modules.indices module deeptrees.modules.losses module deeptrees.modules.metrics module deeptrees.modules.rasterize_utils module deeptrees.modules.traits module deeptrees.modules.utils module deeptrees.pretrained module dilate_img() (in module deeptrees.modules.utils) dilate_outlines (deeptrees.dataloading.datamodule.TreeCrownDelineationDataModule attribute) distance_transforms (deeptrees.dataloading.datamodule.TreeCrownDelineationDataModule attribute) DistanceModel (class in deeptrees.model.distance_model) DistanceTransformGenerator (class in deeptrees.dataloading.preprocessing) divide_by (deeptrees.dataloading.datamodule.TreeCrownDelineationDataModule attribute)

E

extent_to_poly() (in module deeptrees.modules.utils)

F

filter_geometry() (in module deeptrees.modules.rasterize_utils) forward() (deeptrees.model.distance_model.DistanceModel method) (deeptrees.model.inference_model.InferenceModel method) (deeptrees.model.segmentation_model.SegmentationModel method) (deeptrees.modules.losses.BinarySegmentationLoss method) (deeptrees.modules.losses.BinarySegmentationLossWithLogits method)

G

gci() (in module deeptrees.modules.indices) gdal_trafo_to_xarray_trafo() (in module deeptrees.modules.utils) get_bbox_polygon() (in module deeptrees.modules.rasterize_utils) get_crs() (in module deeptrees.modules.utils) get_map_extent() (in module deeptrees.modules.utils) get_rioxarray_trafo() (in module deeptrees.modules.utils)

get_xarray_extent() (in module deeptrees.modules.utils) get_xarray_trafo() (in module deeptrees.modules.rasterize_utils) (in module deeptrees.modules.utils) gpu() (in module deeptrees.modules.utils) green_chlorophyll_index() (in module deeptrees.modules.traits) ground_truth_config (deeptrees.dataloading.datamodule.TreeCrownDelineationDataModule attribute) GroundTruthGenerator (class in deeptrees.dataloading.preprocessing)

H

hue() (in module deeptrees.modules.indices)

hue_index() (in module deeptrees.modules.traits)

I

InferenceModel (class in deeptrees.model.inference_model)

iou() (in module deeptrees.modules.metrics) iou_with_logits() (in module deeptrees.modules.metrics)

L

load_data() (deeptrees.dataloading.datasets.TreeCrownDelineationBaseDataset method) load_filtered_polygons() (in module deeptrees.modules.utils) load_labels() (in module deeptrees.datasets.halleDOP20) load_model_weights() (in module deeptrees.modules.utils)

load_raster() (deeptrees.dataloading.datasets.TreeCrownDelineationBaseDataset method) load_target() (deeptrees.dataloading.datasets.TreeCrownDelineationBaseDataset method) load_tiles() (in module deeptrees.datasets.halleDOP20) longest_cross_spread() (in module deeptrees.modules.traits) longest_spread() (in module deeptrees.modules.traits)

M

mask_and_save_individual_trees() (in module deeptrees.modules.utils) MaskOutlinesGenerator (class in deeptrees.dataloading.preprocessing) masks (deeptrees.dataloading.datamodule.TreeCrownDelineationDataModule attribute) module deeptrees deeptrees.dataloading, [1] deeptrees.dataloading.datamodule deeptrees.dataloading.datasets deeptrees.dataloading.preprocessing deeptrees.datasets, [1] deeptrees.datasets.halleDOP20 deeptrees.model, [1] deeptrees.model.distance_model deeptrees.model.inference_model deeptrees.model.segmentation_model deeptrees.modules, [1] deeptrees.modules.indices deeptrees.modules.losses deeptrees.modules.metrics deeptrees.modules.rasterize_utils deeptrees.modules.traits deeptrees.modules.utils deeptrees.pretrained

N

ndvi() (in module deeptrees.modules.indices) ndvi_config (deeptrees.dataloading.datamodule.TreeCrownDelineationDataModule attribute)

ndvi_xarray() (in module deeptrees.modules.indices) num_workers (deeptrees.dataloading.datamodule.TreeCrownDelineationDataModule attribute)

O

outlines (deeptrees.dataloading.datamodule.TreeCrownDelineationDataModule attribute)

output_filename() (deeptrees.dataloading.preprocessing.GroundTruthGenerator method) overlay_heatmap() (in module deeptrees.modules.utils)

P

predict() (in module deeptrees) predict_dataloader() (deeptrees.dataloading.datamodule.TreeCrownDelineationDataModule method) predict_on_array() (in module deeptrees.modules.utils) predict_on_array_cf() (in module deeptrees.modules.utils)

predict_on_tile() (in module deeptrees.modules.utils) prepare_data() (deeptrees.dataloading.datamodule.TreeCrownDelineationDataModule method) process() (deeptrees.dataloading.preprocessing.DistanceTransformGenerator method) (deeptrees.dataloading.preprocessing.GroundTruthGenerator method) (deeptrees.dataloading.preprocessing.MaskOutlinesGenerator method)

R

rasterize() (in module deeptrees.modules.rasterize_utils)

rasters (deeptrees.dataloading.datamodule.TreeCrownDelineationDataModule attribute) read_img() (in module deeptrees.modules.utils)

S

save_polygons() (in module deeptrees.modules.utils) SegmentationModel (class in deeptrees.model.segmentation_model)

set_batchnorm_momentum() (in module deeptrees.modules.utils) setup() (deeptrees.dataloading.datamodule.TreeCrownDelineationDataModule method) shuffle (deeptrees.dataloading.datamodule.TreeCrownDelineationDataModule attribute)

T

test_dataloader() (deeptrees.dataloading.datamodule.TreeCrownDelineationDataModule method) test_indices (deeptrees.dataloading.datamodule.TreeCrownDelineationDataModule attribute) to_outline() (in module deeptrees.modules.rasterize_utils) train_dataloader() (deeptrees.dataloading.datamodule.TreeCrownDelineationDataModule method) train_indices (deeptrees.dataloading.datamodule.TreeCrownDelineationDataModule attribute)

training_split (deeptrees.dataloading.datamodule.TreeCrownDelineationDataModule attribute) TreeCrownDelineationBaseDataset (class in deeptrees.dataloading.datasets) TreeCrownDelineationDataModule (class in deeptrees.dataloading.datamodule) TreeCrownDelineationDataset (class in deeptrees.dataloading.datasets) TreeCrownDelineationInferenceDataset (class in deeptrees.dataloading.datasets)

V

val_batch_size (deeptrees.dataloading.datamodule.TreeCrownDelineationDataModule attribute)

val_dataloader() (deeptrees.dataloading.datamodule.TreeCrownDelineationDataModule method) val_indices (deeptrees.dataloading.datamodule.TreeCrownDelineationDataModule attribute)

W

write_info_file() (in module deeptrees.modules.utils)

X

xarray_trafo_to_gdal_trafo() (in module deeptrees.modules.rasterize_utils) (in module deeptrees.modules.utils)